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Research papers by PDC staff

Here is a list of recently published research papers by PDC staff members. For a full list of publications by PDC staff, use the link at the end of the page.

Note that for some of the papers you might need to click on "Show others and affiliations" to see the authors from PDC. 

J. Vincent et al., "Strong Scaling of OpenACC enabled Nek5000 on several GPU based HPC systems," in HPCAsia2022 : International Conference on High Performance Computing in Asia-Pacific Region, 2022, pp. 94-102.
M. Karp et al., "A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges," in HPCAsia2022: International Conference on High Performance Computing in Asia-Pacific Region, 2022, pp. 125-136.
S. R. Alam et al., "Fenix : A Pan-European Federation of Supercomputing and Cloud e-Infrastructure Services," Communications of the ACM, vol. 65, no. 4, pp. 46-47, 2022.
M. Atzori et al., "In situ visualization of large-scale turbulence simulations in Nek5000 with ParaView Catalyst," Journal of Supercomputing, vol. 78, no. 3, pp. 3605-3620, 2022.
N. Jansson, "Spectral Element Simulations on the NEC SX-Aurora TSUBASA," in HPC Asia 2021: The International Conference on High Performance Computing in Asia-Pacific Region, 2021.
F. Liu et al., "Accelerating Radiation Therapy Dose Calculation with Nvidia GPUs," in IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum (IPDPSW), 2021.
T. Kjellsson Lindblom and S. Selsto, "Relativistic photoionization with elliptically polarized laser fields in the ultraviolet region," Physical Review A: covering atomic, molecular, and optical physics and quantum information, vol. 104, no. 4, 2021.
A. Alekseenko, S. Pall and E. Lindahl, "Experiences with Adding SYCL Support to GROMACS," in IWOCL'21 : Proceedings International Workshop on OpenCL IWOCL 2021, 2021.
T. Dykes et al., "Mamba: Portable Array-based Abstractions for Heterogeneous High-Performance Systems," in 2021 International Workshop on Performance, Portability and Productivity in HPC (P3HPC), 2021.
X. Aguilar and S. Markidis, "A Deep Learning-Based Particle-in-Cell Method for Plasma Simulations," in 2021 IEEE International Conference On Cluster Computing (CLUSTER 2021), 2021, pp. 692-697.
C. Haine et al., "A Middleware Supporting Data Movement in Complex and Software-Defined Storage and Memory Architectures," in High Performance Computing - ISC High Performance Digital 2021 International Workshops, 2021, pp. 346-357.
M. Saeedimasine et al., "Elucidating axonal injuries through molecular modelling of myelin sheaths and nodes of Ranvier," Frontiers in Molecular Biosciences, vol. 8, 2021.
M. Zhang, J. Gong and L. Axner, "HPC-Enabled Aerodynamic Optimization Studies Using CFD and Design Suite SU2," in Proceeding of the Work in Progress Session held in connection with the PDP 2020 Parallel, Distributed, and Network-Based Processing, 2020.
A. Santiago et al., "HPC compact quasi-Newton algorithm for interface problems," Journal of Fluids and Structures, vol. 96, 2020.
K. Marco et al., "GPU-acceleration of A High Order Finite Difference Code Using Curvilinear Coordinates," in Proceedings of the 2020 International Conference on Computing, Networks and Internet of Things, 2020, pp. 41-47.
K. A. Jansen et al., "Molecular packing structure of fibrin fibers resolved by X-ray scattering and molecular modeling," Soft Matter, vol. 16, no. 35, pp. 8272-8283, 2020.
F. D. Tsourtou et al., "Molecular Dynamics Simulation of Amorphous Poly(3-hexylthiophene)," Macromolecules, vol. 53, no. 18, pp. 7810-7824, 2020.
S. Pall et al., "Heterogeneous parallelization and acceleration of molecular dynamics simulations in GROMACS," Journal of Chemical Physics, vol. 153, no. 13, 2020.
M. Zhang et al., "Automation of High-Fidelity CFD Analysis for Aircraft Design and Optimization Aided by HPC," in Proceeding of 28th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2020, pp. 395-399.
T. Kjellsson Lindblom et al., "Relativistic effects in photoionizing a circular Rydberg state in the optical regime," Physical Review A: covering atomic, molecular, and optical physics and quantum information, vol. 102, no. 6, 2020.
M. Karp et al., "Optimization of Tensor-product Operations in Nekbone on GPUs," in The International Conference for High Performance Computing, Networking, Storage, and Analysis, 2020, 2020.
Full list in the KTH publications portal